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Taverna looks at the sky

On-going efforts to improve seamless building of scientific workflows in the Astronomy domain have already produced the first ready-to-install AstroTaverna plugins .  Among the most important...

Wf4Ever@IIPC General Assembly

  Sean Bechhofer appeared by invitation on a panel at the recent 2012 General Assembly of the International Internet Preservation Consortium in Washington, D.C. on May 3rd. The topic of the...

Querying Provenance of Workflow Results

There exists different types of provenance which are being treated at WF4Ever project. Among all of them the provenance of workflow results records the actions which occurs at the execution of a...

NBIC Application Showcase Award for tool to run Taverna workflows from a web page

Kostas Karasavvas has won the 'Application Showcase Award' at NBIC 2012*. This application makes it possible to run any (public) workfow on myExperiment directly as a Web Application without any...

Wf4Ever in IPAW 2012

  p, li { white-space: pre-wrap; } Two Wf4ever papers have been accepted at the biannual IPAW workshop , which will take place in Santa Barbara, California during the week of 18-22 June...

Wf4Ever project was presented last January 18th in "Virtual Observatory France"

Wf4Ever project was presented last January 18th in "Virtual Observatory France" Annual Meeting held in Observatoire de Paris. In a special session organized by the Workflows Working Group , Jose...

Sharing Interoperable Workflows

The SHIWA (SHaring Interoperable Workflows for large-scale scientific simulations on Available DCIs) project enables publicly available workflows to be used by different research communities...

Research objects

Last month, the Wf4Ever project published v0.1 of the Research Object vocabulary . This set of OWL ontologies gave us a starting point for describing workflows, data aggregations and...

Research Object Quality Preservation

 WF4Ever partners are working on how to use the provenance traces (among other data types)  to support the measurement of integrity and authenticity of  scientific research...

The Third workshop on the Role of Semantic Web in Provenance Management

Members of the Wf4ever team, namely Khalid Belhajjame, Jose Manual-Jomez and Jun Zhao, are co-organizing the 3rd international workshop on the Role of Semantic Web in Provenance Management. The...

Architectural Principles and Preliminary Architecture Published

The Wf4Ever Architecture Task Force is designing and developing the Wf4Ever software architecture for the design and implementation of scientific workflow preservation systems, together with a...

Wf4Ever at Microsoft's 2011 eScience workshop and IEEE eScience Conference

Prof. Dave De Roure spoke on Computational Research Objects at the Microsoft 2011 eScience Workshop (http://research.microsoft.com/en-us/events/escience2011/) and Khalid Belhajjame spoke on ...

Research Object Vocabulary Specification v0.1

The first draft specification of the Research Object Vocabulary has been released as a set of interconnected ontology modules. The core of this vocabulary is the RO ontology (ro -...

Wf4Ever at Dagstuhl: The Future of Research

The Dagstuhl report is already available in http://drops.dagstuhl.de/opus/volltexte/2011/3315/ . From the report, we highlight the following excerpt of Prof. Dave De Roure's talk in the Future of...

Scientific Workflows in Astronomy

Wf4Ever project was presented at ADASS - Astronomical Data Analysis Software and Systems XXI Conference , held in Paris on November 6-10 2011. A BoF interest group meeting was organized by André...

Carole Goble keynote at IC3K

  Wf4Ever PI Carole Goble recently presented a keynote talk at the 3rd International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management ( IC3K ). The talk...

Prof. Dave De Roure presented at the Microsoft Research workflow last week

See Dave's blog entry: http://blogs.nature.com/eresearch/2011/10/30/a-gathering-storm-of-scholarly-transformation

A paper named "A New Approach for Publishing Workflows: Abstractions, Standards, and Linked Data" by Garijo and Gil accepted in WORKS11

A paper named "A New Approach for Publishing Workflows: Abstractions, Standards, and Linked Data” by Garijo and Gil has been accepted in WORKS11 , to be held on November 14th in Seattle within SC...

Wf4Ever to be presented in the 7th IEEE e-Science conference

A Wf4Ever paper titled as "Fostering Scientific Workflow Preservation Through Discovery of Substitute Services" by Belhajjame et al. has been accepted in this year's IEEE e-Science conference, to...

Wf4Ever to be presented at iPRES 2011

Wf4Ever's vision about workflow preservation will be presented at the International Conference on Preservation of Digital Objects ( IPRES ) in Singapore, November 2011.The paper, titled " Towards...

Wf4Ever present at the workshop of the "Landscpe and Identities"

Wf4Ever was involved in a technical workshop of the " Landscape and Identities " EngLaID project, held at Oxford e-Research Centre on 8 June 2011. The EngLaID project will explore the...

Wf4Ever presented at the CERN Workshop on Innovations in Scholarly Communication

Wf4Ever was presented at the CERN Workshop on Innovations in Scholarly Communication (OAI7) , held in Geneva on the 22nd-24th June, 2011 The workshop is held every two years and is...

Wf4Ever presented at the .Astronomy Conference

Wf4Ever was presented at the third edition of the  .Astronomy Conference  held in Oxford New College during 4th - 6th April 2011. The .Astronomy Conference aims to bring...

Wf4Ever was presented at the Workshop of Understanding Provenance and Linked Open Data

Wf4Ever was presented at the Workshop of Understanding Provenance and Linked Open Data in Edinburgh during March 29-30, 2011. This workshop aims to bring together key academic and non-academic...

Wf4Ever presented at the International Virtual Observatory Alliance

Wf4Ever was presented at the International Virtual Observatory Alliance (IVOA) Interop in Nara (Japan) during the  Data Curation and Preservation (DCP) Session on December...

Taverna, BioCatalogue and myExperiment webinar

A live webinar on Taverna , myExperiment  and BioCatalogue  will be held by Paul Fisher on March 8th, 2011 at 16:00 GMT on BitesizeBio. For details see .

BioCatalogue in MIRIAM

The BioCatalogue data type is now part of MIRIAM resources . It provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered...

Wf4Ever presented at the Future Internet Assembly

Wf4Ever was presented at the Future Internet Assembly in Ghent during the Linked Data session on December 16th, 2010. The overall goal of the session was to initiate the discussion on...

Wf4Ever Started!

  The Wf4Ever project kick-off meeting took place on December 2nd and 3rd in Madrid, Spain. The 3-year EU funded project aims at providing the methods and tools required to ensure the...

Blogs Blogs

Taverna looks at the sky

On-going efforts to improve seamless building of scientific workflows in the Astronomy domain have already produced the first ready-to-install AstroTaverna plugins.  Among the most important features are:

  • Access to Virtual Observatory Registry
  • Access to ConeSearch, SIA and SSA VO Services
  • Efficient visualization of VOTables data and description
  • VOTable data extraction and filtering

Upcoming versions will cover SAMP connectivity to other astronomical software, access to CDS SOAP Services, access to STIL Library and STILTS Tools via local services, as well as other local services allowing files format conversion and standard astronomical functions. Moreover, because astronomers are found to be heavy users of Python scripting language, some exploration studies are considering to provide Taverna users the possibility to add their own Jython beanshells when building Taverna workflows. 

The work undertaken in the frame of the Wf4Ever project will foster the development of astronomical workflows, favoring the use of Virtual Observatory standards for interoperability among astronomical data and process.

Wf4Ever@IIPC General Assembly

 

Sean Bechhofer appeared by invitation on a panel at the recent 2012 General Assembly of the International Internet Preservation Consortium in Washington, D.C. on May 3rd. The topic of the panel was Harvesting and Preserving the Future Web and issues discussed included the notions of replay and reproducability; the need for an understanding of decay in the context of workflows and the need for provenance information to support replay.  The panel also featured representatives from the British Library, the Danish National Library, Bibliotheca Alexandrina, LANL, and the Internet Archive. 
 
Querying Provenance of Workflow Results

There exists different types of provenance which are being treated at WF4Ever project. Among all of them the provenance of workflow results records the actions which occurs at the execution of a workflow. This collected information can include inputs, intermediate results, outputs, and their execution timestamp (see definition). This information is specially relevant due to it allows the evaluation of some desirable characteristics of a RO (for example repeatibility or reproducibility).

Currently some initial data related with provenance of workflow results have been generated from different sourcing platforms(Taverna and WINGS) in order to provide a few examples which are compliant with the wfprov ontology developed at Wf4Ever as part of the RO ontology. Furthermore, the PROV-O ontology has been also used as a bridge between source ontologies and the final wfprov ontology improving its generalization capabilities of the process. These imported examples are also part of the testbed which is being currently use for validation purposes of the different funcionalities of the project. 

This provenance data has been made available for testing purposes at a SPARQL endpoint and some examples queries have been created to get some of that provenance information in order to allow users feedback and for its use as part of the integrity and authenticity RO funcionalities.

NBIC Application Showcase Award for tool to run Taverna workflows from a web page

Kostas Karasavvas has won the 'Application Showcase Award' at NBIC 2012*. This application makes it possible to run any (public) workfow on myExperiment directly as a Web Application without any further dependencies. It enables workflow developers to share their work with workflow-ignorant collaborators, without any need to develop some kind of user interface.

According to award committee chair and NBIC CTO Rob Hooft the prize was awarded for 'providing a real service that many people have been waiting for'. Its general high quality was appreciated and that Kostas prioritizes usefulness and stability over novelty.  The award committee added that the prize is meant as an incentive for the finishing touches, such as further integratation with myExperiment.

Kostas and collaborators previously enabled the use of Taverna workflows in the server-based tool 'Galaxy', that is highly popular among genomics researchers. With the same amount of complexity as for any other tool in Galaxy, myExperiment users can include a workflow as a tool in Galaxy.

Kostas' work is the result of a NBIC-myGrid-myExperiment collaboration in the context of NBIC's BioAssist program. The project is supervised by wf4ever user Marco Roos, and driven by users associated with BioAssist and workflow designers at the Human Genetics Department of wf4ever partner LUMC**. The Application Showcase used biological workflows that also feature in wf4ever as examples.

* Netherlands Bioinformatics Centre
** Leiden University Medical Centre.

Wf4Ever in IPAW 2012

 

Two Wf4ever papers have been accepted at the biannual IPAW workshop, which will take place in Santa Barbara, California during the week of 18-22 June 2012.

 

- Khalid Belhajjame, Paolo Missier, and Carole A. Goble. Detecting Duplicate Records in Scientific Workflow Results.

- Paolo Missier and Khalid Belhajjame. A PROV encoding for provenance analysis using deductive rules.

 

The first paper presents a new algorithm for detecting duplicates in workflow results by exploiting their provenance, whereas the second paper describes an implementation of the W3C provenance data model PROV using the DLV Datalog engine.

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Project ID card

  • Funded under: 7th FWP (Seventh Framework Programme)

  • Area: Digital Libraries and Digital Preservation. (ICT-2009.4.1)

  • Project reference: 270192

  • Total cost: 3.86 million euro

  • EU contribution: 2.94 million euro

  • Execution: From 2010-12-01 to 2013-11-30

  • Duration: 36 months

  • Project status: Execution

  • Contract type: Collaborative project (generic)

Wf4Ever presented at the International Virtual Observatory Alliance

Wf4Ever was presented at the International Virtual Observatory Alliance (IVOA) Interop in Nara (Japan) during the Data Curation and Preservation (DCP) Session on December 8th, 2010. IVOA is an international initiative which aims to facilitate the coordination and collaboration necessary for the development and deployment of the tools, systems and organizational structures necessary to enable the international utilization of astronomical archives as an integrated and interoperating Virtual Observatory. The DCP Interest Working Group in IVOA is established to share best practices and engage IVOA member projects in the long-term curation and preservation of astronomical data. Since one of the scientific areas which Wf4Ever will address first is the astronomical community, the main guidelines were presented in this talk focused in the potential interests of the astronomy community and more particularly in the context of the Virtual Observatory.